Removed cells clustering + enrichment (used by report)

Removed cells clustering + enrichment (used by report)

Usage

removed_cells_analysis(
  obj,
  status_df,
  save_dir = "qc_outputs",
  species = c("mouse", "human"),
  assay = "RNA"
)

Arguments

obj

Seurat object

status_df

Data frame with 'qc_status'

save_dir

Output directory for PNG/CSV

species

'mouse' or 'human'

assay

Assay name

Value

Invisibly returns NULL; writes files to disk